centromere

Centromics: visualing centromeres with multiple omics data

An algorithm for centromere assembly using long error-prone reads

Fast sequence alignment for centromere with RaMA

Scripts for the Nature Biotechnology paper, 2020: Automated assembly of centromeres from ultra-long error-prone reads

Accurately find CDRs and boundaries using a Hidden Markov Model

Centromere calculation from TRASH-derived repeat arrays: block merging, filtering, and gap profiling.

Pipeline for telomere-to-telomere QC of genome assemblies: assembly stats, telomere detection, gap analysis, clustering, and visualization.

Automated centromere satellite identification and multi-omics visualization for chromosome-level genome assemblies

Interactive browser for centromeric structural variation, on T2T-CHM13 v2.0. Encrypted pending publication.

Parallel alpha-satellite HOR/SF annotation: single-binary Rust port of the HumAS-HMMER pipeline