Integration tests and reference examples for all external scientific data vendors used by Cyto.
Multicohort PDAC reanalysis: GPRC5A is cancer-cell enriched but not a transportable stand-alone prognostic biomarker
Whole-slide lung cancer subtyping (LUAD vs LUSC) using GigaPath embeddings and multiple-instance learning, with external CPTAC validation.
This project implements a distributed streaming pipeline for multi-omics breast cancer data analysis, integrating TCGA, CPTAC genomics and proteomics data for real time processing with Apache Kafka and multi-omics integration for comprehensive cancer analysis
Multi-omic computational pipeline for prioritizing combination-therapy hypotheses in triple-negative breast cancer — kinase target scoring (CTS), regimen ranking (MDCOE/HCOS), DepMap/CPTAC validation, agentic literature discovery, and an in-development GNN-based drug-synergy predictor.
Integrative clinical breast cancer proteomics project using CPTAC, TCGA, and GSE176078 to characterize TNBC-associated protein changes and validate candidate biomarkers.
Data transformation and integration service between CPTAC BCR and CDR.
A reproducible multi-omics bioinformatics workflow for investigating extracellular matrix-associated molecular signatures in pancreatic ductal adenocarcinoma.
Personal profile repository for Vladimir Mitev, Founder and CEO of Helena Bioinformatics.
End-to-end bulk RNA-seq differential expression pipeline for breast cancer using real public transcriptomics data, automated GDC download, QC, statistical testing, and visualisation.
Exploratory CPTAC breast cancer proteomics analysis of tumor state, age, and self-reported race
Multi Omics in R & Python (QBIO 490)
Reproducible analysis release for developmental regulons in endometrial carcinoma.
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