VarFish: comprehensive DNA variant analysis for diagnostics and research
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Sep 10, 2026 - Python
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variant-prioritization
Here are 39 public repositories matching this topic...
VEP-like tool for sequence ontology and HGVS annotation of VCF files
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Sep 15, 2026 - Rust
A port of biocommons/hgvs to the Rust programming language
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Sep 14, 2026 - Rust
Genome annotation based on Rust and RocksDB
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Sep 14, 2026 - Rust
A port of biocommons/seqrepo to the Rust programming language
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Feb 4, 2025 - Rust
(Legacy) Annotate variants for import into VarFish server.
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Jan 23, 2024 - Java
Download public databases for VarFish
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Jun 23, 2026 - Python
Setup VarFish as using Docker Compose
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Jan 24, 2024 - Makefile
Multi-source germline variant annotation pipeline
bioinformatics nextflow vcf clinvar vep variant-annotations hpo precision-medicine germline-variants acmg variant-interpretation nextflow-pipeline clinical-genomics rare-diseases genomic-variants vcf-annotation variant-prioritization
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Sep 16, 2026 - Python
A method for predicting chromatin features and prioritizing non-coding rice variants using DNA language models.
deep-learning rice histone-modifications chromatin-accessibiity plant-genomics non-coding-variants post-gwas variant-prioritization
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Aug 8, 2026 - Python
VarFish REST API client (CLI + Python package)
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Jan 24, 2025 - Python
Rust-based background worker for varfish-server
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Dec 8, 2025 - Rust
(Partial) port of biocommons/bioutils to Rust
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Jul 27, 2026 - Rust
Cembra Bio: evidence-governed research framework for universal genomic transfer models, with osteoarthritis variant prioritization as the reference application.
machine-learning bioinformatics genomics reproducible-research computational-biology transfer-learning osteoarthritis foundation-models variant-prioritization
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Aug 22, 2026 - Python
VarFish (Snakemake) Client Workflow for Querying Snakemake
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May 8, 2023 - Python
DEPRECATED Convert annotation database files to Var:fish: import format
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Jan 24, 2024 - Makefile
Simple REST API wrapper for CADD-scripts
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Dec 3, 2024 - Python
Clinvar data builds for annonars
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Sep 7, 2026 - HCL
DEPRECATED, use https://github.com/bihealth/varfish-docker-compose instead
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Jan 24, 2024 - Makefile
Personal profile repository for Vladimir Mitev, Founder and CEO of Helena Bioinformatics.
bioinformatics transcription-factors genomics reproducible-research computational-biology tcga cancer-genomics transcriptomics variant-annotations variant-analysis precision-oncology variant-interpretation regulons gene-regulatory-networks cptac endometrial-cancer variant-prioritization
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Aug 2, 2026
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