✂️ ⚡ Rapid haploid variant calling and core genome alignment
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Dec 12, 2025 - Perl
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haploid
Here are 8 public repositories matching this topic...
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
snps binary nexus vcf phylogenetics alignment fasta snapp phylip vcf-files polyploid haploid phylogenetic-analysis outgroup convert-snps vcf-format phylip-matrix diploid
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Jul 7, 2023 - Python
R haploid sperm/oocyte data imputation (rhapsodi). A package for analysis of low-coverage single-cell sequencing data from multiple gametes.
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Jul 25, 2022 - R
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
bioinformatics linkage-disequilibrium simulation population-genetics allele-frequencies haploid diploid wright-fisher-model
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Nov 9, 2022 - Jupyter Notebook
Available at: https://clstacy.github.io/yeastKODoublingTimes/ . Doubling time estimates for haploid KO library, data from doi: 10.1093/g3journal/jkac240
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Dec 8, 2022 - HTML
Analysis scripts for "A method for low-coverage single-gamete sequence analysis demonstrates adherence to Mendel's first law across a large sample of human sperm" https://elifesciences.org/articles/76383
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Aug 21, 2023 - R
Wrigh Fisherman Simulation for Haploid population
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Mar 29, 2018 - HTML
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