Single Cell Multi-omics deep clustering
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Jul 1, 2025 - Python
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multiomics-data
Here are 21 public repositories matching this topic...
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
python diversity plotly protein dask fastq k-mer-counting k-mer-frequency divideandconquer metagenomic-analysis metatranscriptomic-analysis kmer-frequency-count nucleotides diversity-estimation database-independent-analysis multiomics multiomics-data
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Jun 9, 2026 - HTML
R package for visualising high-dimensional categorical data. Fully ggplot compatible implementation for the diceplot plotting library
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Jul 8, 2026 - R
Code for paper Multiomics dynamic learning enables personalized diagnosis and prognosis for pan-cancer and cancer-subtypes
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Oct 29, 2023 - Python
Network Regression Embeddings reveal cell-type Transcription Factor coordination for target gene (TG) regulation
transcription-factors protein-interaction network-regularization gene-expression-profiles transcriptional-regulatory-network single-cell-analysis ppi-networks network-lasso multiomics-data gene-regulatory-network-inference bioinformatics-software transcription-factor-coordination regularization-embeddings regression-embeddings predictor-interactions network-guided-regression regression-with-prior-knowledge network-based-inference netrem
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Aug 19, 2026 - Jupyter Notebook
MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dominik Heider, and Georges Hattab
visualization machine-learning bioinformatics time-series cross-platform clustering web-app exploratory-data-analysis time-series-analysis multiomics multiomics-data
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May 17, 2022 - Python
An R package to perform differential network analysis in single and multi-omic data. It can also be used for feature selection in ML.
bioinformatics proteomics omics network-analysis transcriptomics differential-expression interactive-visualizations multiomics multiomics-data
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Jun 16, 2026 - R
MOMSI Standard Landscape Review Curation Workflow & Multi-Omics Dashboard
genomics sequencing standards data-integration proteomics metabolomics mass-spectrometry lipidomics curation bioimaging multiomics-data
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Jun 11, 2026 - JavaScript
Transcriptomic analysis of WNT/TGFβ/EMT signaling in epithelial ovarian cancer (EOC) datasets.
bioinformatics-pipeline biomarker-discovery multiomics cancer-transcriptome-profiles multiomics-data ovarian epithelial-tissue biomarker-prediction
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Apr 29, 2026 - R
Molecular Data Engineering and Multimodal Artificial Intelligence for Translational Biomedical Discovery
python docker data-science airflow bioinformatics ml pytorch data-engineering bioinformatics-pipeline deeplearning bioinformatics-analysis bioinformatics-scripts bioinformatics-algorithms bioinformatics-tool mlops multiomics mlflow multiomics-data
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Aug 24, 2026
Topology-based analysis and querying of short longitudinal multi-omics trajectories using Omics Trajectory Signatures (OTS)
bioinformatics systems-biology bioconductor longitudinal-data r-package omics transcriptomics trajectory-analysis trajectory multiomics time-course multiomics-data
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Aug 4, 2026 - R
Computational drug repurposing for LUAD using TCGA + CMap + multi-omics integration.
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May 30, 2026 - R
Multi-omics integration of kidney transcriptomics and urinary proteomics to explore fibrosis, metabolism, and inflammation in diabetic kidney disease (DKD)
bioinformatics transcriptomics precision-medicine chronic-kidney-disease multiomics nephrology multiomics-data diabetic-kidney-disease
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Sep 12, 2026 - R
Jupyter notebooks and supporting functions for analzying triomics data generated with MissionBio.
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Nov 6, 2023 - Jupyter Notebook
Code for paper Multiomics dynamic learning enables personalized diagnosis and prognosis for pan-cancer and cancer-subtypes
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Oct 29, 2023 - Python
Analysis code, scripts, and data visualization from my Master's thesis focused on the multiomic integration (transcriptomics, lipidomics, spatial lipidomics) of monoglyceride responses in adipose tissue macrophages within the context of obesity.
bioinformatics rna-seq adipose-tissue transcriptomics lipidomics rna-seq-analysis lcms obesity rna-seq-pipeline macrophages multiomics-data spacial-lipidomics monoglycerides
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Jun 23, 2025
coxnnet v1 and v2 models updated to work with Python3.
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May 1, 2021 - Jupyter Notebook
Multi-omics integration method using AE and GCN
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Jun 7, 2023 - Python
Graph Neural Networks with Multiple Prior Knowledge for Multi-Omics Data Analysis
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May 1, 2023 - Python
Simulate and download multi-omics datasets, by selecting omics types, sample sizes, and other parameters.
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Feb 9, 2025 - Python
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