omics-data

R package to Import and Modify SVG (XML) Graphic Files

Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data

A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

A web-based life science omics and future imaging data management solution

The first GANs-based omics-to-omics translation framework

An python omics data toolkit for the analysis across biological scales

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

A reproduction of the primer tutorial in deep learning genomics proposed in Nature Genetics (2018) in Pytorch.

Metabolic Drug Repurposing Pipeline

An R package for utilities to guide in-depth detection of circadian signals from omics time series data

Penalized Semiparametric Bayesian Cox Models

Consensus pathway analysis module developed by the University of Nevada at Reno

Ultragsea computes preranked gene set enrichment much like fGSEA but is 100 times faster

RNA-seq analysis of glioma combination drug therapies

Codebase for the synthetic lethality project -- an innovative approach for condition-specific antiviral therapeutics.

Power OpenClaw with 60 Arabic AI skills, dialect support, and local-first privacy on any model

Simulate and download multi-omics datasets, by selecting omics types, sample sizes, and other parameters.

spatial RNA-seq analysis in Glioblastoma using Python

End-to-end pipeline from raw FASTQ files to differentially expressed genes, built entirely from command-line tools on Linux. ~98% mapping rate across all samples and 1,192 significantly differentially express

My PhD thesis