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habitat nav integration (habinav) - #4011

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leshy merged 8 commits into
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ivan/feat/habitat-sim
Sep 10, 2026
Merged

habitat nav integration (habinav)#4011
leshy merged 8 commits into
mainfrom
ivan/feat/habitat-sim

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@leshy

@leshy leshy commented Sep 8, 2026

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dimos run habitat-voxel
dimos run habitat-raycaster
dimos run habitat-nav

…ints

Runs photorealistic scanned indoor scenes (HM3D) as a dimos robot: Twist in,
RGB-D + pose + a registered scan out. Enough to exercise mapping, planning and
following against real building geometry without a robot.

habitat-sim publishes python 3.9 conda builds only, so it cannot share the dimos
interpreter. It runs as a NativeModule subprocess and speaks dimos over zenoh via
dimos_lcm, the standalone message package -- no dimos import on that side, which
a test enforces. The LCM runtime is deliberately not installed: we publish over
zenoh, and building it needs a CMake/JDK toolchain the shell does not have.

nix/install.sh is the build_command. It creates the conda env, installs the
deps, fetches the annotated HM3D example scene and writes the wrapper whose
existence NativeModule uses as the build sentinel, so a fresh checkout builds on
first run. The wrapper is needed because CLI args are appended after the
executable, leaving no place for a script path.

Blueprints layer so a failure can be bisected by dropping a level:

  habitat-teleop     sim + streams, drive it with the viewer keys
  habitat-raycaster  + RayTracingVoxelMap on a sensor-frame scan
  habitat-nav        + MLSPlannerNative + BasicPathFollower, goal by clicking
  habitat-voxel      VoxelGridMapper alternative on a pre-registered scan

The two mappers want the scan in different frames, so habitat-voxel is an
alternative rather than a layer: VoxelGridMapper assumes world-frame clouds,
while RayTracingVoxelMap raytraces from the sensor origin and registers the
cloud itself through tf.

No MovementManager. Its arbitration is real-robot safety behaviour that fights
the viewer: releasing a movement key publishes a zero twist, which latches
teleop, cancels the active goal with a NaN and blocks nav_cmd_vel for a
cooldown. Viewer teleop and the follower both publish onto cmd_vel instead, and
the viewer's clicked point is already a PointStamped, so it needs no translation
to reach the planner's goal.

frames.py owns the habitat(y-up) to dimos(z-up) conversion, tested against basis
vectors and a quaternion recorded from the live simulator. The camera hangs off
a camera_optical frame: a pinhole points down its own +z, which in the body
frame is straight up.
The aihabitat conda channel has no aarch64 habitat-sim, so advertising
aarch64-linux in the flake only turned a clear "unsupported" into a confusing
conda solve failure on Jetson.

The build path was verified cold: env, data and wrapper moved aside, the exact
build_command re-run from the four committed files, and the result driven
through NativeModule to ready. No compiler step in the log.
@codecov

codecov Bot commented Sep 8, 2026

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❌ 7 Tests Failed:

Tests completed Failed Passed Skipped
5392 7 5385 102
View the top 1 failed test(s) by shortest run time
dimos.utils.test_shm::test_create_or_attach_splits_owner_and_reader
Stack Traces | 0.508s run time
name = 'dimos_test_691cfbb67917'
slow_ftruncate = <function slow_ftruncate.<locals>.delayed at 0x7fe432caa200>

    def test_create_or_attach_splits_owner_and_reader(name, slow_ftruncate):
        """Concurrent symmetric callers: exactly one owns, the other waits and attaches."""
        out: list[tuple[bool, int]] = []
        lock = threading.Lock()
        barrier = threading.Barrier(2)
    
        def racer() -> None:
            barrier.wait()
            shm, owner = create_or_attach_shm(name, SIZE, timeout=5.0)
            with lock:
                out.append((owner, shm.size))
            shm.close()
    
        threads = [threading.Thread(target=racer, daemon=True) for _ in range(2)]
        for t in threads:
            t.start()
        for t in threads:
            t.join(timeout=8)
    
        assert len(out) == 2, f"a racer did not finish: {out}"
        assert sorted(owner for owner, _ in out) == [False, True]
>       assert {size for _, size in out} == {SIZE}
E       assert {0, 65536} == {65536}
E         
E         Extra items in the left set:
E         #x1B[0m#x1B[94m0#x1B[39;49;00m#x1B[90m#x1B[39;49;00m
E         
E         Full diff:
E         #x1B[0m#x1B[90m #x1B[39;49;00m {#x1B[90m#x1B[39;49;00m
E         #x1B[92m+     0,#x1B[39;49;00m#x1B[90m#x1B[39;49;00m
E         #x1B[90m #x1B[39;49;00m     65536,#x1B[90m#x1B[39;49;00m
E         #x1B[90m #x1B[39;49;00m }#x1B[90m#x1B[39;49;00m

barrier    = <threading.Barrier at 0x7fe3d5ed61b0: waiters=0/2>
lock       = <unlocked _thread.lock object at 0x7fe432bf3b00>
name       = 'dimos_test_691cfbb67917'
out        = [(True, 65536), (False, 0)]
racer      = <function test_create_or_attach_splits_owner_and_reader.<locals>.racer at 0x7fe432ca9760>
slow_ftruncate = <function slow_ftruncate.<locals>.delayed at 0x7fe432caa200>
t          = <Thread(Thread-7094 (racer), stopped daemon 140616151324352)>
threads    = [<Thread(Thread-7093 (racer), stopped daemon 140614410696384)>, <Thread(Thread-7094 (racer), stopped daemon 140616151324352)>]

dimos/utils/test_shm.py:149: AssertionError
View the full list of 7 ❄️ flaky test(s)
dimos.experimental.memory.test_rust_recorder_e2e::test_cli_recording_uses_existing_binary_for_both_formats[mcap]

Flake rate in main: 33.33% (Passed 6 times, Failed 3 times)

Stack Traces | 0s run time
@pytest.fixture(scope="module")
    def rust_recorder_executable() -> Path:
>       subprocess.run(
            [
                "nix",
                "--extra-experimental-features",
                "nix-command flakes",
                "build",
                "-L",
                ".#dimos-memory-recorder",
                "--no-write-lock-file",
            ],
            cwd=_RUST_PACKAGE,
            check=True,
        )


.../experimental/memory/test_rust_recorder_e2e.py:78: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:548: in run
    with Popen(*popenargs, **kwargs) as process:
        capture_output = False
        check      = True
        input      = None
        kwargs     = {'cwd': PosixPath('.../experimental/memory/rust')}
        popenargs  = (['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...],)
        timeout    = None
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1026: in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
        args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
        bufsize    = -1
        c2pread    = -1
        c2pwrite   = -1
        close_fds  = True
        creationflags = 0
        cwd        = PosixPath('.../experimental/memory/rust')
        encoding   = None
        env        = None
        errors     = None
        errread    = -1
        errwrite   = -1
        executable = None
        extra_groups = None
        gid        = None
        gids       = None
        group      = None
        p2cread    = -1
        p2cwrite   = -1
        pass_fds   = ()
        pipesize   = -1
        preexec_fn = None
        process_group = -1
        restore_signals = True
        self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
        shell      = False
        start_new_session = False
        startupinfo = None
        stderr     = None
        stdin      = None
        stdout     = None
        text       = None
        uid        = None
        umask      = -1
        universal_newlines = None
        user       = None
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
args = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
executable = b'nix', preexec_fn = None, close_fds = True, pass_fds = ()
cwd = PosixPath('.../experimental/memory/rust')
env = None, startupinfo = None, creationflags = 0, shell = False, p2cread = -1
p2cwrite = -1, c2pread = -1, c2pwrite = -1, errread = -1, errwrite = -1
restore_signals = True, gid = None, gids = None, uid = None, umask = -1
start_new_session = False, process_group = -1

    def _execute_child(self, args, executable, preexec_fn, close_fds,
                       pass_fds, cwd, env,
                       startupinfo, creationflags, shell,
                       p2cread, p2cwrite,
                       c2pread, c2pwrite,
                       errread, errwrite,
                       restore_signals,
                       gid, gids, uid, umask,
                       start_new_session, process_group):
        """Execute program (POSIX version)"""
    
        if isinstance(args, (str, bytes)):
            args = [args]
        elif isinstance(args, os.PathLike):
            if shell:
                raise TypeError('path-like args is not allowed when '
                                'shell is true')
            args = [args]
        else:
            args = list(args)
    
        if shell:
            # On Android the default shell is at '....../system/bin/sh'.
            unix_shell = ('....../system/bin/sh' if
                      hasattr(sys, 'getandroidapilevel') else '/bin/sh')
            args = [unix_shell, "-c"] + args
            if executable:
                args[0] = executable
    
        if executable is None:
            executable = args[0]
    
        sys.audit("subprocess.Popen", executable, args, cwd, env)
    
        if (_USE_POSIX_SPAWN
                and os.path.dirname(executable)
                and preexec_fn is None
                and not close_fds
                and not pass_fds
                and cwd is None
                and (p2cread == -1 or p2cread > 2)
                and (c2pwrite == -1 or c2pwrite > 2)
                and (errwrite == -1 or errwrite > 2)
                and not start_new_session
                and process_group == -1
                and gid is None
                and gids is None
                and uid is None
                and umask < 0):
            self._posix_spawn(args, executable, env, restore_signals,
                              p2cread, p2cwrite,
                              c2pread, c2pwrite,
                              errread, errwrite)
            return
    
        orig_executable = executable
    
        # For transferring possible exec failure from child to parent.
        # Data format: "exception name:hex errno:description"
        # Pickle is not used; it is complex and involves memory allocation.
        errpipe_read, errpipe_write = os.pipe()
        # errpipe_write must not be in the standard io 0, 1, or 2 fd range.
        low_fds_to_close = []
        while errpipe_write < 3:
            low_fds_to_close.append(errpipe_write)
            errpipe_write = os.dup(errpipe_write)
        for low_fd in low_fds_to_close:
            os.close(low_fd)
        try:
            try:
                # We must avoid complex work that could involve
                # malloc or free in the child process to avoid
                # potential deadlocks, thus we do all this here.
                # and pass it to fork_exec()
    
                if env is not None:
                    env_list = []
                    for k, v in env.items():
                        k = os.fsencode(k)
                        if b'=' in k:
                            raise ValueError("illegal environment variable name")
                        env_list.append(k + b'=' + os.fsencode(v))
                else:
                    env_list = None  # Use execv instead of execve.
                executable = os.fsencode(executable)
                if os.path.dirname(executable):
                    executable_list = (executable,)
                else:
                    # This matches the behavior of os._execvpe().
                    executable_list = tuple(
                        os.path.join(os.fsencode(dir), executable)
                        for dir in os.get_exec_path(env))
                fds_to_keep = set(pass_fds)
                fds_to_keep.add(errpipe_write)
                self.pid = _fork_exec(
                        args, executable_list,
                        close_fds, tuple(sorted(map(int, fds_to_keep))),
                        cwd, env_list,
                        p2cread, p2cwrite, c2pread, c2pwrite,
                        errread, errwrite,
                        errpipe_read, errpipe_write,
                        restore_signals, start_new_session,
                        process_group, gid, gids, uid, umask,
                        preexec_fn, _USE_VFORK)
                self._child_created = True
            finally:
                # be sure the FD is closed no matter what
                os.close(errpipe_write)
    
            self._close_pipe_fds(p2cread, p2cwrite,
                                 c2pread, c2pwrite,
                                 errread, errwrite)
    
            # Wait for exec to fail or succeed; possibly raising an
            # exception (limited in size)
            errpipe_data = bytearray()
            while True:
                part = os.read(errpipe_read, 50000)
                errpipe_data += part
                if not part or len(errpipe_data) > 50000:
                    break
        finally:
            # be sure the FD is closed no matter what
            os.close(errpipe_read)
    
        if errpipe_data:
            try:
                pid, sts = os.waitpid(self.pid, 0)
                if pid == self.pid:
                    self._handle_exitstatus(sts)
                else:
                    self.returncode = sys.maxsize
            except ChildProcessError:
                pass
    
            try:
                exception_name, hex_errno, err_msg = (
                        errpipe_data.split(b':', 2))
                # The encoding here should match the encoding
                # written in by the subprocess implementations
                # like _posixsubprocess
                err_msg = err_msg.decode()
            except ValueError:
                exception_name = b'SubprocessError'
                hex_errno = b'0'
                err_msg = 'Bad exception data from child: {!r}'.format(
                              bytes(errpipe_data))
            child_exception_type = getattr(
                    builtins, exception_name.decode('ascii'),
                    SubprocessError)
            if issubclass(child_exception_type, OSError) and hex_errno:
                errno_num = int(hex_errno, 16)
                if err_msg == "noexec:chdir":
                    err_msg = ""
                    # The error must be from chdir(cwd).
                    err_filename = cwd
                elif err_msg == "noexec":
                    err_msg = ""
                    err_filename = None
                else:
                    err_filename = orig_executable
                if errno_num != 0:
                    err_msg = os.strerror(errno_num)
                if err_filename is not None:
>                   raise child_exception_type(errno_num, err_msg, err_filename)
E                   FileNotFoundError: [Errno 2] No such file or directory: 'nix'

args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
c2pread    = -1
c2pwrite   = -1
child_exception_type = <class 'OSError'>
close_fds  = True
creationflags = 0
cwd        = PosixPath('.../experimental/memory/rust')
env        = None
env_list   = None
err_filename = 'nix'
err_msg    = 'No such file or directory'
errno_num  = 2
errpipe_data = bytearray(b'OSError:2:')
errpipe_read = 294
errpipe_write = 295
errread    = -1
errwrite   = -1
exception_name = bytearray(b'OSError')
executable = b'nix'
executable_list = (b'.../dimos/dimos/.venv/bin/nix', b'....../Users/ec2-user/.local.../uv/python/nix', b'/...l/uv/0.12.12/aarch64/nix', b'....../Users/ec2-user/.local/bin/nix', b'.../homebrew/bin/nix', b'.../homebrew/sbin/nix', ...)
fds_to_keep = {295}
gid        = None
gids       = None
hex_errno  = bytearray(b'2')
low_fds_to_close = []
orig_executable = 'nix'
p2cread    = -1
p2cwrite   = -1
part       = b''
pass_fds   = ()
pid        = 11817
preexec_fn = None
process_group = -1
restore_signals = True
self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
shell      = False
start_new_session = False
startupinfo = None
sts        = 65280
uid        = None
umask      = -1

../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1955: FileNotFoundError
dimos.experimental.memory.test_rust_recorder_e2e::test_cli_recording_uses_existing_binary_for_both_formats[sqlite]

Flake rate in main: 33.33% (Passed 6 times, Failed 3 times)

Stack Traces | 0s run time
@pytest.fixture(scope="module")
    def rust_recorder_executable() -> Path:
>       subprocess.run(
            [
                "nix",
                "--extra-experimental-features",
                "nix-command flakes",
                "build",
                "-L",
                ".#dimos-memory-recorder",
                "--no-write-lock-file",
            ],
            cwd=_RUST_PACKAGE,
            check=True,
        )


.../experimental/memory/test_rust_recorder_e2e.py:78: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:548: in run
    with Popen(*popenargs, **kwargs) as process:
        capture_output = False
        check      = True
        input      = None
        kwargs     = {'cwd': PosixPath('.../experimental/memory/rust')}
        popenargs  = (['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...],)
        timeout    = None
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1026: in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
        args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
        bufsize    = -1
        c2pread    = -1
        c2pwrite   = -1
        close_fds  = True
        creationflags = 0
        cwd        = PosixPath('.../experimental/memory/rust')
        encoding   = None
        env        = None
        errors     = None
        errread    = -1
        errwrite   = -1
        executable = None
        extra_groups = None
        gid        = None
        gids       = None
        group      = None
        p2cread    = -1
        p2cwrite   = -1
        pass_fds   = ()
        pipesize   = -1
        preexec_fn = None
        process_group = -1
        restore_signals = True
        self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
        shell      = False
        start_new_session = False
        startupinfo = None
        stderr     = None
        stdin      = None
        stdout     = None
        text       = None
        uid        = None
        umask      = -1
        universal_newlines = None
        user       = None
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
args = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
executable = b'nix', preexec_fn = None, close_fds = True, pass_fds = ()
cwd = PosixPath('.../experimental/memory/rust')
env = None, startupinfo = None, creationflags = 0, shell = False, p2cread = -1
p2cwrite = -1, c2pread = -1, c2pwrite = -1, errread = -1, errwrite = -1
restore_signals = True, gid = None, gids = None, uid = None, umask = -1
start_new_session = False, process_group = -1

    def _execute_child(self, args, executable, preexec_fn, close_fds,
                       pass_fds, cwd, env,
                       startupinfo, creationflags, shell,
                       p2cread, p2cwrite,
                       c2pread, c2pwrite,
                       errread, errwrite,
                       restore_signals,
                       gid, gids, uid, umask,
                       start_new_session, process_group):
        """Execute program (POSIX version)"""
    
        if isinstance(args, (str, bytes)):
            args = [args]
        elif isinstance(args, os.PathLike):
            if shell:
                raise TypeError('path-like args is not allowed when '
                                'shell is true')
            args = [args]
        else:
            args = list(args)
    
        if shell:
            # On Android the default shell is at '....../system/bin/sh'.
            unix_shell = ('....../system/bin/sh' if
                      hasattr(sys, 'getandroidapilevel') else '/bin/sh')
            args = [unix_shell, "-c"] + args
            if executable:
                args[0] = executable
    
        if executable is None:
            executable = args[0]
    
        sys.audit("subprocess.Popen", executable, args, cwd, env)
    
        if (_USE_POSIX_SPAWN
                and os.path.dirname(executable)
                and preexec_fn is None
                and not close_fds
                and not pass_fds
                and cwd is None
                and (p2cread == -1 or p2cread > 2)
                and (c2pwrite == -1 or c2pwrite > 2)
                and (errwrite == -1 or errwrite > 2)
                and not start_new_session
                and process_group == -1
                and gid is None
                and gids is None
                and uid is None
                and umask < 0):
            self._posix_spawn(args, executable, env, restore_signals,
                              p2cread, p2cwrite,
                              c2pread, c2pwrite,
                              errread, errwrite)
            return
    
        orig_executable = executable
    
        # For transferring possible exec failure from child to parent.
        # Data format: "exception name:hex errno:description"
        # Pickle is not used; it is complex and involves memory allocation.
        errpipe_read, errpipe_write = os.pipe()
        # errpipe_write must not be in the standard io 0, 1, or 2 fd range.
        low_fds_to_close = []
        while errpipe_write < 3:
            low_fds_to_close.append(errpipe_write)
            errpipe_write = os.dup(errpipe_write)
        for low_fd in low_fds_to_close:
            os.close(low_fd)
        try:
            try:
                # We must avoid complex work that could involve
                # malloc or free in the child process to avoid
                # potential deadlocks, thus we do all this here.
                # and pass it to fork_exec()
    
                if env is not None:
                    env_list = []
                    for k, v in env.items():
                        k = os.fsencode(k)
                        if b'=' in k:
                            raise ValueError("illegal environment variable name")
                        env_list.append(k + b'=' + os.fsencode(v))
                else:
                    env_list = None  # Use execv instead of execve.
                executable = os.fsencode(executable)
                if os.path.dirname(executable):
                    executable_list = (executable,)
                else:
                    # This matches the behavior of os._execvpe().
                    executable_list = tuple(
                        os.path.join(os.fsencode(dir), executable)
                        for dir in os.get_exec_path(env))
                fds_to_keep = set(pass_fds)
                fds_to_keep.add(errpipe_write)
                self.pid = _fork_exec(
                        args, executable_list,
                        close_fds, tuple(sorted(map(int, fds_to_keep))),
                        cwd, env_list,
                        p2cread, p2cwrite, c2pread, c2pwrite,
                        errread, errwrite,
                        errpipe_read, errpipe_write,
                        restore_signals, start_new_session,
                        process_group, gid, gids, uid, umask,
                        preexec_fn, _USE_VFORK)
                self._child_created = True
            finally:
                # be sure the FD is closed no matter what
                os.close(errpipe_write)
    
            self._close_pipe_fds(p2cread, p2cwrite,
                                 c2pread, c2pwrite,
                                 errread, errwrite)
    
            # Wait for exec to fail or succeed; possibly raising an
            # exception (limited in size)
            errpipe_data = bytearray()
            while True:
                part = os.read(errpipe_read, 50000)
                errpipe_data += part
                if not part or len(errpipe_data) > 50000:
                    break
        finally:
            # be sure the FD is closed no matter what
            os.close(errpipe_read)
    
        if errpipe_data:
            try:
                pid, sts = os.waitpid(self.pid, 0)
                if pid == self.pid:
                    self._handle_exitstatus(sts)
                else:
                    self.returncode = sys.maxsize
            except ChildProcessError:
                pass
    
            try:
                exception_name, hex_errno, err_msg = (
                        errpipe_data.split(b':', 2))
                # The encoding here should match the encoding
                # written in by the subprocess implementations
                # like _posixsubprocess
                err_msg = err_msg.decode()
            except ValueError:
                exception_name = b'SubprocessError'
                hex_errno = b'0'
                err_msg = 'Bad exception data from child: {!r}'.format(
                              bytes(errpipe_data))
            child_exception_type = getattr(
                    builtins, exception_name.decode('ascii'),
                    SubprocessError)
            if issubclass(child_exception_type, OSError) and hex_errno:
                errno_num = int(hex_errno, 16)
                if err_msg == "noexec:chdir":
                    err_msg = ""
                    # The error must be from chdir(cwd).
                    err_filename = cwd
                elif err_msg == "noexec":
                    err_msg = ""
                    err_filename = None
                else:
                    err_filename = orig_executable
                if errno_num != 0:
                    err_msg = os.strerror(errno_num)
                if err_filename is not None:
>                   raise child_exception_type(errno_num, err_msg, err_filename)
E                   FileNotFoundError: [Errno 2] No such file or directory: 'nix'

args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
c2pread    = -1
c2pwrite   = -1
child_exception_type = <class 'OSError'>
close_fds  = True
creationflags = 0
cwd        = PosixPath('.../experimental/memory/rust')
env        = None
env_list   = None
err_filename = 'nix'
err_msg    = 'No such file or directory'
errno_num  = 2
errpipe_data = bytearray(b'OSError:2:')
errpipe_read = 294
errpipe_write = 295
errread    = -1
errwrite   = -1
exception_name = bytearray(b'OSError')
executable = b'nix'
executable_list = (b'.../dimos/dimos/.venv/bin/nix', b'....../Users/ec2-user/.local.../uv/python/nix', b'/...l/uv/0.12.12/aarch64/nix', b'....../Users/ec2-user/.local/bin/nix', b'.../homebrew/bin/nix', b'.../homebrew/sbin/nix', ...)
fds_to_keep = {295}
gid        = None
gids       = None
hex_errno  = bytearray(b'2')
low_fds_to_close = []
orig_executable = 'nix'
p2cread    = -1
p2cwrite   = -1
part       = b''
pass_fds   = ()
pid        = 11817
preexec_fn = None
process_group = -1
restore_signals = True
self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
shell      = False
start_new_session = False
startupinfo = None
sts        = 65280
uid        = None
umask      = -1

../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1955: FileNotFoundError
dimos.experimental.memory.test_rust_recorder_e2e::test_rust_artifact_is_readable_by_python_memory2[mcap]

Flake rate in main: 33.33% (Passed 6 times, Failed 3 times)

Stack Traces | 0s run time
@pytest.fixture(scope="module")
    def rust_recorder_executable() -> Path:
>       subprocess.run(
            [
                "nix",
                "--extra-experimental-features",
                "nix-command flakes",
                "build",
                "-L",
                ".#dimos-memory-recorder",
                "--no-write-lock-file",
            ],
            cwd=_RUST_PACKAGE,
            check=True,
        )


.../experimental/memory/test_rust_recorder_e2e.py:78: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:548: in run
    with Popen(*popenargs, **kwargs) as process:
        capture_output = False
        check      = True
        input      = None
        kwargs     = {'cwd': PosixPath('.../experimental/memory/rust')}
        popenargs  = (['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...],)
        timeout    = None
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1026: in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
        args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
        bufsize    = -1
        c2pread    = -1
        c2pwrite   = -1
        close_fds  = True
        creationflags = 0
        cwd        = PosixPath('.../experimental/memory/rust')
        encoding   = None
        env        = None
        errors     = None
        errread    = -1
        errwrite   = -1
        executable = None
        extra_groups = None
        gid        = None
        gids       = None
        group      = None
        p2cread    = -1
        p2cwrite   = -1
        pass_fds   = ()
        pipesize   = -1
        preexec_fn = None
        process_group = -1
        restore_signals = True
        self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
        shell      = False
        start_new_session = False
        startupinfo = None
        stderr     = None
        stdin      = None
        stdout     = None
        text       = None
        uid        = None
        umask      = -1
        universal_newlines = None
        user       = None
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
args = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
executable = b'nix', preexec_fn = None, close_fds = True, pass_fds = ()
cwd = PosixPath('.../experimental/memory/rust')
env = None, startupinfo = None, creationflags = 0, shell = False, p2cread = -1
p2cwrite = -1, c2pread = -1, c2pwrite = -1, errread = -1, errwrite = -1
restore_signals = True, gid = None, gids = None, uid = None, umask = -1
start_new_session = False, process_group = -1

    def _execute_child(self, args, executable, preexec_fn, close_fds,
                       pass_fds, cwd, env,
                       startupinfo, creationflags, shell,
                       p2cread, p2cwrite,
                       c2pread, c2pwrite,
                       errread, errwrite,
                       restore_signals,
                       gid, gids, uid, umask,
                       start_new_session, process_group):
        """Execute program (POSIX version)"""
    
        if isinstance(args, (str, bytes)):
            args = [args]
        elif isinstance(args, os.PathLike):
            if shell:
                raise TypeError('path-like args is not allowed when '
                                'shell is true')
            args = [args]
        else:
            args = list(args)
    
        if shell:
            # On Android the default shell is at '....../system/bin/sh'.
            unix_shell = ('....../system/bin/sh' if
                      hasattr(sys, 'getandroidapilevel') else '/bin/sh')
            args = [unix_shell, "-c"] + args
            if executable:
                args[0] = executable
    
        if executable is None:
            executable = args[0]
    
        sys.audit("subprocess.Popen", executable, args, cwd, env)
    
        if (_USE_POSIX_SPAWN
                and os.path.dirname(executable)
                and preexec_fn is None
                and not close_fds
                and not pass_fds
                and cwd is None
                and (p2cread == -1 or p2cread > 2)
                and (c2pwrite == -1 or c2pwrite > 2)
                and (errwrite == -1 or errwrite > 2)
                and not start_new_session
                and process_group == -1
                and gid is None
                and gids is None
                and uid is None
                and umask < 0):
            self._posix_spawn(args, executable, env, restore_signals,
                              p2cread, p2cwrite,
                              c2pread, c2pwrite,
                              errread, errwrite)
            return
    
        orig_executable = executable
    
        # For transferring possible exec failure from child to parent.
        # Data format: "exception name:hex errno:description"
        # Pickle is not used; it is complex and involves memory allocation.
        errpipe_read, errpipe_write = os.pipe()
        # errpipe_write must not be in the standard io 0, 1, or 2 fd range.
        low_fds_to_close = []
        while errpipe_write < 3:
            low_fds_to_close.append(errpipe_write)
            errpipe_write = os.dup(errpipe_write)
        for low_fd in low_fds_to_close:
            os.close(low_fd)
        try:
            try:
                # We must avoid complex work that could involve
                # malloc or free in the child process to avoid
                # potential deadlocks, thus we do all this here.
                # and pass it to fork_exec()
    
                if env is not None:
                    env_list = []
                    for k, v in env.items():
                        k = os.fsencode(k)
                        if b'=' in k:
                            raise ValueError("illegal environment variable name")
                        env_list.append(k + b'=' + os.fsencode(v))
                else:
                    env_list = None  # Use execv instead of execve.
                executable = os.fsencode(executable)
                if os.path.dirname(executable):
                    executable_list = (executable,)
                else:
                    # This matches the behavior of os._execvpe().
                    executable_list = tuple(
                        os.path.join(os.fsencode(dir), executable)
                        for dir in os.get_exec_path(env))
                fds_to_keep = set(pass_fds)
                fds_to_keep.add(errpipe_write)
                self.pid = _fork_exec(
                        args, executable_list,
                        close_fds, tuple(sorted(map(int, fds_to_keep))),
                        cwd, env_list,
                        p2cread, p2cwrite, c2pread, c2pwrite,
                        errread, errwrite,
                        errpipe_read, errpipe_write,
                        restore_signals, start_new_session,
                        process_group, gid, gids, uid, umask,
                        preexec_fn, _USE_VFORK)
                self._child_created = True
            finally:
                # be sure the FD is closed no matter what
                os.close(errpipe_write)
    
            self._close_pipe_fds(p2cread, p2cwrite,
                                 c2pread, c2pwrite,
                                 errread, errwrite)
    
            # Wait for exec to fail or succeed; possibly raising an
            # exception (limited in size)
            errpipe_data = bytearray()
            while True:
                part = os.read(errpipe_read, 50000)
                errpipe_data += part
                if not part or len(errpipe_data) > 50000:
                    break
        finally:
            # be sure the FD is closed no matter what
            os.close(errpipe_read)
    
        if errpipe_data:
            try:
                pid, sts = os.waitpid(self.pid, 0)
                if pid == self.pid:
                    self._handle_exitstatus(sts)
                else:
                    self.returncode = sys.maxsize
            except ChildProcessError:
                pass
    
            try:
                exception_name, hex_errno, err_msg = (
                        errpipe_data.split(b':', 2))
                # The encoding here should match the encoding
                # written in by the subprocess implementations
                # like _posixsubprocess
                err_msg = err_msg.decode()
            except ValueError:
                exception_name = b'SubprocessError'
                hex_errno = b'0'
                err_msg = 'Bad exception data from child: {!r}'.format(
                              bytes(errpipe_data))
            child_exception_type = getattr(
                    builtins, exception_name.decode('ascii'),
                    SubprocessError)
            if issubclass(child_exception_type, OSError) and hex_errno:
                errno_num = int(hex_errno, 16)
                if err_msg == "noexec:chdir":
                    err_msg = ""
                    # The error must be from chdir(cwd).
                    err_filename = cwd
                elif err_msg == "noexec":
                    err_msg = ""
                    err_filename = None
                else:
                    err_filename = orig_executable
                if errno_num != 0:
                    err_msg = os.strerror(errno_num)
                if err_filename is not None:
>                   raise child_exception_type(errno_num, err_msg, err_filename)
E                   FileNotFoundError: [Errno 2] No such file or directory: 'nix'

args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
c2pread    = -1
c2pwrite   = -1
child_exception_type = <class 'OSError'>
close_fds  = True
creationflags = 0
cwd        = PosixPath('.../experimental/memory/rust')
env        = None
env_list   = None
err_filename = 'nix'
err_msg    = 'No such file or directory'
errno_num  = 2
errpipe_data = bytearray(b'OSError:2:')
errpipe_read = 294
errpipe_write = 295
errread    = -1
errwrite   = -1
exception_name = bytearray(b'OSError')
executable = b'nix'
executable_list = (b'.../dimos/dimos/.venv/bin/nix', b'....../Users/ec2-user/.local.../uv/python/nix', b'/...l/uv/0.12.12/aarch64/nix', b'....../Users/ec2-user/.local/bin/nix', b'.../homebrew/bin/nix', b'.../homebrew/sbin/nix', ...)
fds_to_keep = {295}
gid        = None
gids       = None
hex_errno  = bytearray(b'2')
low_fds_to_close = []
orig_executable = 'nix'
p2cread    = -1
p2cwrite   = -1
part       = b''
pass_fds   = ()
pid        = 11817
preexec_fn = None
process_group = -1
restore_signals = True
self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
shell      = False
start_new_session = False
startupinfo = None
sts        = 65280
uid        = None
umask      = -1

../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1955: FileNotFoundError
dimos.experimental.memory.test_rust_recorder_e2e::test_rust_artifact_is_readable_by_python_memory2[sqlite]

Flake rate in main: 33.33% (Passed 6 times, Failed 3 times)

Stack Traces | 0.018s run time
@pytest.fixture(scope="module")
    def rust_recorder_executable() -> Path:
>       subprocess.run(
            [
                "nix",
                "--extra-experimental-features",
                "nix-command flakes",
                "build",
                "-L",
                ".#dimos-memory-recorder",
                "--no-write-lock-file",
            ],
            cwd=_RUST_PACKAGE,
            check=True,
        )


.../experimental/memory/test_rust_recorder_e2e.py:78: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:548: in run
    with Popen(*popenargs, **kwargs) as process:
        capture_output = False
        check      = True
        input      = None
        kwargs     = {'cwd': PosixPath('.../experimental/memory/rust')}
        popenargs  = (['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...],)
        timeout    = None
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1026: in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
        args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
        bufsize    = -1
        c2pread    = -1
        c2pwrite   = -1
        close_fds  = True
        creationflags = 0
        cwd        = PosixPath('.../experimental/memory/rust')
        encoding   = None
        env        = None
        errors     = None
        errread    = -1
        errwrite   = -1
        executable = None
        extra_groups = None
        gid        = None
        gids       = None
        group      = None
        p2cread    = -1
        p2cwrite   = -1
        pass_fds   = ()
        pipesize   = -1
        preexec_fn = None
        process_group = -1
        restore_signals = True
        self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
        shell      = False
        start_new_session = False
        startupinfo = None
        stderr     = None
        stdin      = None
        stdout     = None
        text       = None
        uid        = None
        umask      = -1
        universal_newlines = None
        user       = None
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
args = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
executable = b'nix', preexec_fn = None, close_fds = True, pass_fds = ()
cwd = PosixPath('.../experimental/memory/rust')
env = None, startupinfo = None, creationflags = 0, shell = False, p2cread = -1
p2cwrite = -1, c2pread = -1, c2pwrite = -1, errread = -1, errwrite = -1
restore_signals = True, gid = None, gids = None, uid = None, umask = -1
start_new_session = False, process_group = -1

    def _execute_child(self, args, executable, preexec_fn, close_fds,
                       pass_fds, cwd, env,
                       startupinfo, creationflags, shell,
                       p2cread, p2cwrite,
                       c2pread, c2pwrite,
                       errread, errwrite,
                       restore_signals,
                       gid, gids, uid, umask,
                       start_new_session, process_group):
        """Execute program (POSIX version)"""
    
        if isinstance(args, (str, bytes)):
            args = [args]
        elif isinstance(args, os.PathLike):
            if shell:
                raise TypeError('path-like args is not allowed when '
                                'shell is true')
            args = [args]
        else:
            args = list(args)
    
        if shell:
            # On Android the default shell is at '....../system/bin/sh'.
            unix_shell = ('....../system/bin/sh' if
                      hasattr(sys, 'getandroidapilevel') else '/bin/sh')
            args = [unix_shell, "-c"] + args
            if executable:
                args[0] = executable
    
        if executable is None:
            executable = args[0]
    
        sys.audit("subprocess.Popen", executable, args, cwd, env)
    
        if (_USE_POSIX_SPAWN
                and os.path.dirname(executable)
                and preexec_fn is None
                and not close_fds
                and not pass_fds
                and cwd is None
                and (p2cread == -1 or p2cread > 2)
                and (c2pwrite == -1 or c2pwrite > 2)
                and (errwrite == -1 or errwrite > 2)
                and not start_new_session
                and process_group == -1
                and gid is None
                and gids is None
                and uid is None
                and umask < 0):
            self._posix_spawn(args, executable, env, restore_signals,
                              p2cread, p2cwrite,
                              c2pread, c2pwrite,
                              errread, errwrite)
            return
    
        orig_executable = executable
    
        # For transferring possible exec failure from child to parent.
        # Data format: "exception name:hex errno:description"
        # Pickle is not used; it is complex and involves memory allocation.
        errpipe_read, errpipe_write = os.pipe()
        # errpipe_write must not be in the standard io 0, 1, or 2 fd range.
        low_fds_to_close = []
        while errpipe_write < 3:
            low_fds_to_close.append(errpipe_write)
            errpipe_write = os.dup(errpipe_write)
        for low_fd in low_fds_to_close:
            os.close(low_fd)
        try:
            try:
                # We must avoid complex work that could involve
                # malloc or free in the child process to avoid
                # potential deadlocks, thus we do all this here.
                # and pass it to fork_exec()
    
                if env is not None:
                    env_list = []
                    for k, v in env.items():
                        k = os.fsencode(k)
                        if b'=' in k:
                            raise ValueError("illegal environment variable name")
                        env_list.append(k + b'=' + os.fsencode(v))
                else:
                    env_list = None  # Use execv instead of execve.
                executable = os.fsencode(executable)
                if os.path.dirname(executable):
                    executable_list = (executable,)
                else:
                    # This matches the behavior of os._execvpe().
                    executable_list = tuple(
                        os.path.join(os.fsencode(dir), executable)
                        for dir in os.get_exec_path(env))
                fds_to_keep = set(pass_fds)
                fds_to_keep.add(errpipe_write)
                self.pid = _fork_exec(
                        args, executable_list,
                        close_fds, tuple(sorted(map(int, fds_to_keep))),
                        cwd, env_list,
                        p2cread, p2cwrite, c2pread, c2pwrite,
                        errread, errwrite,
                        errpipe_read, errpipe_write,
                        restore_signals, start_new_session,
                        process_group, gid, gids, uid, umask,
                        preexec_fn, _USE_VFORK)
                self._child_created = True
            finally:
                # be sure the FD is closed no matter what
                os.close(errpipe_write)
    
            self._close_pipe_fds(p2cread, p2cwrite,
                                 c2pread, c2pwrite,
                                 errread, errwrite)
    
            # Wait for exec to fail or succeed; possibly raising an
            # exception (limited in size)
            errpipe_data = bytearray()
            while True:
                part = os.read(errpipe_read, 50000)
                errpipe_data += part
                if not part or len(errpipe_data) > 50000:
                    break
        finally:
            # be sure the FD is closed no matter what
            os.close(errpipe_read)
    
        if errpipe_data:
            try:
                pid, sts = os.waitpid(self.pid, 0)
                if pid == self.pid:
                    self._handle_exitstatus(sts)
                else:
                    self.returncode = sys.maxsize
            except ChildProcessError:
                pass
    
            try:
                exception_name, hex_errno, err_msg = (
                        errpipe_data.split(b':', 2))
                # The encoding here should match the encoding
                # written in by the subprocess implementations
                # like _posixsubprocess
                err_msg = err_msg.decode()
            except ValueError:
                exception_name = b'SubprocessError'
                hex_errno = b'0'
                err_msg = 'Bad exception data from child: {!r}'.format(
                              bytes(errpipe_data))
            child_exception_type = getattr(
                    builtins, exception_name.decode('ascii'),
                    SubprocessError)
            if issubclass(child_exception_type, OSError) and hex_errno:
                errno_num = int(hex_errno, 16)
                if err_msg == "noexec:chdir":
                    err_msg = ""
                    # The error must be from chdir(cwd).
                    err_filename = cwd
                elif err_msg == "noexec":
                    err_msg = ""
                    err_filename = None
                else:
                    err_filename = orig_executable
                if errno_num != 0:
                    err_msg = os.strerror(errno_num)
                if err_filename is not None:
>                   raise child_exception_type(errno_num, err_msg, err_filename)
E                   FileNotFoundError: [Errno 2] No such file or directory: 'nix'

args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
c2pread    = -1
c2pwrite   = -1
child_exception_type = <class 'OSError'>
close_fds  = True
creationflags = 0
cwd        = PosixPath('.../experimental/memory/rust')
env        = None
env_list   = None
err_filename = 'nix'
err_msg    = 'No such file or directory'
errno_num  = 2
errpipe_data = bytearray(b'OSError:2:')
errpipe_read = 294
errpipe_write = 295
errread    = -1
errwrite   = -1
exception_name = bytearray(b'OSError')
executable = b'nix'
executable_list = (b'.../dimos/dimos/.venv/bin/nix', b'....../Users/ec2-user/.local.../uv/python/nix', b'/...l/uv/0.12.12/aarch64/nix', b'....../Users/ec2-user/.local/bin/nix', b'.../homebrew/bin/nix', b'.../homebrew/sbin/nix', ...)
fds_to_keep = {295}
gid        = None
gids       = None
hex_errno  = bytearray(b'2')
low_fds_to_close = []
orig_executable = 'nix'
p2cread    = -1
p2cwrite   = -1
part       = b''
pass_fds   = ()
pid        = 11817
preexec_fn = None
process_group = -1
restore_signals = True
self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
shell      = False
start_new_session = False
startupinfo = None
sts        = 65280
uid        = None
umask      = -1

../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1955: FileNotFoundError
dimos.experimental.memory.test_rust_recorder_e2e::test_tf_records_over_zenoh_and_replays_through_python

Flake rate in main: 33.33% (Passed 6 times, Failed 3 times)

Stack Traces | 0s run time
@pytest.fixture(scope="module")
    def rust_recorder_executable() -> Path:
>       subprocess.run(
            [
                "nix",
                "--extra-experimental-features",
                "nix-command flakes",
                "build",
                "-L",
                ".#dimos-memory-recorder",
                "--no-write-lock-file",
            ],
            cwd=_RUST_PACKAGE,
            check=True,
        )


.../experimental/memory/test_rust_recorder_e2e.py:78: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:548: in run
    with Popen(*popenargs, **kwargs) as process:
        capture_output = False
        check      = True
        input      = None
        kwargs     = {'cwd': PosixPath('.../experimental/memory/rust')}
        popenargs  = (['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...],)
        timeout    = None
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1026: in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
        args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
        bufsize    = -1
        c2pread    = -1
        c2pwrite   = -1
        close_fds  = True
        creationflags = 0
        cwd        = PosixPath('.../experimental/memory/rust')
        encoding   = None
        env        = None
        errors     = None
        errread    = -1
        errwrite   = -1
        executable = None
        extra_groups = None
        gid        = None
        gids       = None
        group      = None
        p2cread    = -1
        p2cwrite   = -1
        pass_fds   = ()
        pipesize   = -1
        preexec_fn = None
        process_group = -1
        restore_signals = True
        self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
        shell      = False
        start_new_session = False
        startupinfo = None
        stderr     = None
        stdin      = None
        stdout     = None
        text       = None
        uid        = None
        umask      = -1
        universal_newlines = None
        user       = None
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
args = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
executable = b'nix', preexec_fn = None, close_fds = True, pass_fds = ()
cwd = PosixPath('.../experimental/memory/rust')
env = None, startupinfo = None, creationflags = 0, shell = False, p2cread = -1
p2cwrite = -1, c2pread = -1, c2pwrite = -1, errread = -1, errwrite = -1
restore_signals = True, gid = None, gids = None, uid = None, umask = -1
start_new_session = False, process_group = -1

    def _execute_child(self, args, executable, preexec_fn, close_fds,
                       pass_fds, cwd, env,
                       startupinfo, creationflags, shell,
                       p2cread, p2cwrite,
                       c2pread, c2pwrite,
                       errread, errwrite,
                       restore_signals,
                       gid, gids, uid, umask,
                       start_new_session, process_group):
        """Execute program (POSIX version)"""
    
        if isinstance(args, (str, bytes)):
            args = [args]
        elif isinstance(args, os.PathLike):
            if shell:
                raise TypeError('path-like args is not allowed when '
                                'shell is true')
            args = [args]
        else:
            args = list(args)
    
        if shell:
            # On Android the default shell is at '....../system/bin/sh'.
            unix_shell = ('....../system/bin/sh' if
                      hasattr(sys, 'getandroidapilevel') else '/bin/sh')
            args = [unix_shell, "-c"] + args
            if executable:
                args[0] = executable
    
        if executable is None:
            executable = args[0]
    
        sys.audit("subprocess.Popen", executable, args, cwd, env)
    
        if (_USE_POSIX_SPAWN
                and os.path.dirname(executable)
                and preexec_fn is None
                and not close_fds
                and not pass_fds
                and cwd is None
                and (p2cread == -1 or p2cread > 2)
                and (c2pwrite == -1 or c2pwrite > 2)
                and (errwrite == -1 or errwrite > 2)
                and not start_new_session
                and process_group == -1
                and gid is None
                and gids is None
                and uid is None
                and umask < 0):
            self._posix_spawn(args, executable, env, restore_signals,
                              p2cread, p2cwrite,
                              c2pread, c2pwrite,
                              errread, errwrite)
            return
    
        orig_executable = executable
    
        # For transferring possible exec failure from child to parent.
        # Data format: "exception name:hex errno:description"
        # Pickle is not used; it is complex and involves memory allocation.
        errpipe_read, errpipe_write = os.pipe()
        # errpipe_write must not be in the standard io 0, 1, or 2 fd range.
        low_fds_to_close = []
        while errpipe_write < 3:
            low_fds_to_close.append(errpipe_write)
            errpipe_write = os.dup(errpipe_write)
        for low_fd in low_fds_to_close:
            os.close(low_fd)
        try:
            try:
                # We must avoid complex work that could involve
                # malloc or free in the child process to avoid
                # potential deadlocks, thus we do all this here.
                # and pass it to fork_exec()
    
                if env is not None:
                    env_list = []
                    for k, v in env.items():
                        k = os.fsencode(k)
                        if b'=' in k:
                            raise ValueError("illegal environment variable name")
                        env_list.append(k + b'=' + os.fsencode(v))
                else:
                    env_list = None  # Use execv instead of execve.
                executable = os.fsencode(executable)
                if os.path.dirname(executable):
                    executable_list = (executable,)
                else:
                    # This matches the behavior of os._execvpe().
                    executable_list = tuple(
                        os.path.join(os.fsencode(dir), executable)
                        for dir in os.get_exec_path(env))
                fds_to_keep = set(pass_fds)
                fds_to_keep.add(errpipe_write)
                self.pid = _fork_exec(
                        args, executable_list,
                        close_fds, tuple(sorted(map(int, fds_to_keep))),
                        cwd, env_list,
                        p2cread, p2cwrite, c2pread, c2pwrite,
                        errread, errwrite,
                        errpipe_read, errpipe_write,
                        restore_signals, start_new_session,
                        process_group, gid, gids, uid, umask,
                        preexec_fn, _USE_VFORK)
                self._child_created = True
            finally:
                # be sure the FD is closed no matter what
                os.close(errpipe_write)
    
            self._close_pipe_fds(p2cread, p2cwrite,
                                 c2pread, c2pwrite,
                                 errread, errwrite)
    
            # Wait for exec to fail or succeed; possibly raising an
            # exception (limited in size)
            errpipe_data = bytearray()
            while True:
                part = os.read(errpipe_read, 50000)
                errpipe_data += part
                if not part or len(errpipe_data) > 50000:
                    break
        finally:
            # be sure the FD is closed no matter what
            os.close(errpipe_read)
    
        if errpipe_data:
            try:
                pid, sts = os.waitpid(self.pid, 0)
                if pid == self.pid:
                    self._handle_exitstatus(sts)
                else:
                    self.returncode = sys.maxsize
            except ChildProcessError:
                pass
    
            try:
                exception_name, hex_errno, err_msg = (
                        errpipe_data.split(b':', 2))
                # The encoding here should match the encoding
                # written in by the subprocess implementations
                # like _posixsubprocess
                err_msg = err_msg.decode()
            except ValueError:
                exception_name = b'SubprocessError'
                hex_errno = b'0'
                err_msg = 'Bad exception data from child: {!r}'.format(
                              bytes(errpipe_data))
            child_exception_type = getattr(
                    builtins, exception_name.decode('ascii'),
                    SubprocessError)
            if issubclass(child_exception_type, OSError) and hex_errno:
                errno_num = int(hex_errno, 16)
                if err_msg == "noexec:chdir":
                    err_msg = ""
                    # The error must be from chdir(cwd).
                    err_filename = cwd
                elif err_msg == "noexec":
                    err_msg = ""
                    err_filename = None
                else:
                    err_filename = orig_executable
                if errno_num != 0:
                    err_msg = os.strerror(errno_num)
                if err_filename is not None:
>                   raise child_exception_type(errno_num, err_msg, err_filename)
E                   FileNotFoundError: [Errno 2] No such file or directory: 'nix'

args       = ['nix', '--extra-experimental-features', 'nix-command flakes', 'build', '-L', '.#dimos-memory-recorder', ...]
c2pread    = -1
c2pwrite   = -1
child_exception_type = <class 'OSError'>
close_fds  = True
creationflags = 0
cwd        = PosixPath('.../experimental/memory/rust')
env        = None
env_list   = None
err_filename = 'nix'
err_msg    = 'No such file or directory'
errno_num  = 2
errpipe_data = bytearray(b'OSError:2:')
errpipe_read = 294
errpipe_write = 295
errread    = -1
errwrite   = -1
exception_name = bytearray(b'OSError')
executable = b'nix'
executable_list = (b'.../dimos/dimos/.venv/bin/nix', b'....../Users/ec2-user/.local.../uv/python/nix', b'/...l/uv/0.12.12/aarch64/nix', b'....../Users/ec2-user/.local/bin/nix', b'.../homebrew/bin/nix', b'.../homebrew/sbin/nix', ...)
fds_to_keep = {295}
gid        = None
gids       = None
hex_errno  = bytearray(b'2')
low_fds_to_close = []
orig_executable = 'nix'
p2cread    = -1
p2cwrite   = -1
part       = b''
pass_fds   = ()
pid        = 11817
preexec_fn = None
process_group = -1
restore_signals = True
self       = <Popen: returncode: 255 args: ['nix', '--extra-experimental-features', 'nix-...>
shell      = False
start_new_session = False
startupinfo = None
sts        = 65280
uid        = None
umask      = -1

../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/subprocess.py:1955: FileNotFoundError
dimos.hardware.whole_body.dual_openyam_damiao.test_adapter::test_adapter_connects_complete_dual_yam_topology

Flake rate in main: 33.33% (Passed 6 times, Failed 3 times)

Stack Traces | 0.001s run time
mocker = <pytest_mock.plugin.MockerFixture object at 0x3b0080da0>

    @pytest.fixture
    def adapter(mocker: MockerFixture) -> Iterator[DualOpenYamDamiaoAdapter]:
>       mocker.patch.object(can_motor_control, "SocketCanBus", can_motor_control.MockCanBus)

mocker     = <pytest_mock.plugin.MockerFixture object at 0x3b0080da0>

.../whole_body/dual_openyam_damiao/test_adapter.py:32: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
.venv/lib/python3.12....../site-packages/pytest_mock/plugin.py:294: in object
    return self._start_patch(
        attribute  = 'SocketCanBus'
        autospec   = None
        create     = False
        kwargs     = {}
        new        = <class 'can_motor_control.MockCanBus'>
        new_callable = None
        self       = <pytest_mock.plugin.MockerFixture._Patcher object at 0x3b0081160>
        spec       = None
        spec_set   = None
        target     = <module 'can_motor_control' from '.../dimos/dimos/.venv/lib/python3.12............/site-packages/can_motor_control/__init__.py'>
.venv/lib/python3.12....../site-packages/pytest_mock/plugin.py:263: in _start_patch
    mocked: MockType = p.start()
        args       = (<module 'can_motor_control' from '.../dimos/dimos/.venv/lib/python3.12............/site-packages/can_motor_control/__init__.py'>, 'SocketCanBus')
        kwargs     = {'autospec': None, 'create': False, 'new': <class 'can_motor_control.MockCanBus'>, 'new_callable': None, ...}
        mock_func  = <function _patch_object at 0x1030d32e0>
        p          = <unittest.mock._patch object at 0x3b0081190>
        self       = <pytest_mock.plugin.MockerFixture._Patcher object at 0x3b0081160>
        warn_on_mock_enter = True
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/unittest/mock.py:1624: in start
    result = self.__enter__()
        self       = <unittest.mock._patch object at 0x3b0081190>
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/unittest/mock.py:1467: in __enter__
    original, local = self.get_original()
        autospec   = None
        kwargs     = {}
        new        = <class 'can_motor_control.MockCanBus'>
        new_callable = None
        self       = <unittest.mock._patch object at 0x3b0081190>
        spec       = None
        spec_set   = None
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <unittest.mock._patch object at 0x3b0081190>

    def get_original(self):
        target = self.getter()
        name = self.attribute
    
        original = DEFAULT
        local = False
    
        try:
            original = target.__dict__[name]
        except (AttributeError, KeyError):
            original = getattr(target, name, DEFAULT)
        else:
            local = True
    
        if name in _builtins and isinstance(target, ModuleType):
            self.create = True
    
        if not self.create and original is DEFAULT:
>           raise AttributeError(
                "%s does not have the attribute %r" % (target, name)
            )
E           AttributeError: <module 'can_motor_control' from '.../dimos/dimos/.venv/lib/python3.12............/site-packages/can_motor_control/__init__.py'> does not have the attribute 'SocketCanBus'

local      = False
name       = 'SocketCanBus'
original   = sentinel.DEFAULT
self       = <unittest.mock._patch object at 0x3b0081190>
target     = <module 'can_motor_control' from '.../dimos/dimos/.venv/lib/python3.12............/site-packages/can_motor_control/__init__.py'>

../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/unittest/mock.py:1437: AttributeError
dimos.hardware.whole_body.openarm_damiao.test_adapter::test_openarm_feedback_limits_match_urdf_joint_limits

Flake rate in main: 33.33% (Passed 6 times, Failed 3 times)

Stack Traces | 0.001s run time
mocker = <pytest_mock.plugin.MockerFixture object at 0x3b009f1a0>

    @pytest.fixture
    def openarm_adapter(mocker: MockerFixture) -> Iterator[OpenArmDamiaoAdapter]:
>       mocker.patch.object(can_motor_control, "SocketCanBus", can_motor_control.MockCanBus)

mocker     = <pytest_mock.plugin.MockerFixture object at 0x3b009f1a0>

.../whole_body/openarm_damiao/test_adapter.py:33: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
.venv/lib/python3.12....../site-packages/pytest_mock/plugin.py:294: in object
    return self._start_patch(
        attribute  = 'SocketCanBus'
        autospec   = None
        create     = False
        kwargs     = {}
        new        = <class 'can_motor_control.MockCanBus'>
        new_callable = None
        self       = <pytest_mock.plugin.MockerFixture._Patcher object at 0x3b009f260>
        spec       = None
        spec_set   = None
        target     = <module 'can_motor_control' from '.../dimos/dimos/.venv/lib/python3.12............/site-packages/can_motor_control/__init__.py'>
.venv/lib/python3.12....../site-packages/pytest_mock/plugin.py:263: in _start_patch
    mocked: MockType = p.start()
        args       = (<module 'can_motor_control' from '.../dimos/dimos/.venv/lib/python3.12............/site-packages/can_motor_control/__init__.py'>, 'SocketCanBus')
        kwargs     = {'autospec': None, 'create': False, 'new': <class 'can_motor_control.MockCanBus'>, 'new_callable': None, ...}
        mock_func  = <function _patch_object at 0x1030d32e0>
        p          = <unittest.mock._patch object at 0x3b009f3e0>
        self       = <pytest_mock.plugin.MockerFixture._Patcher object at 0x3b009f260>
        warn_on_mock_enter = True
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/unittest/mock.py:1624: in start
    result = self.__enter__()
        self       = <unittest.mock._patch object at 0x3b009f3e0>
../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/unittest/mock.py:1467: in __enter__
    original, local = self.get_original()
        autospec   = None
        kwargs     = {}
        new        = <class 'can_motor_control.MockCanBus'>
        new_callable = None
        self       = <unittest.mock._patch object at 0x3b009f3e0>
        spec       = None
        spec_set   = None
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <unittest.mock._patch object at 0x3b009f3e0>

    def get_original(self):
        target = self.getter()
        name = self.attribute
    
        original = DEFAULT
        local = False
    
        try:
            original = target.__dict__[name]
        except (AttributeError, KeyError):
            original = getattr(target, name, DEFAULT)
        else:
            local = True
    
        if name in _builtins and isinstance(target, ModuleType):
            self.create = True
    
        if not self.create and original is DEFAULT:
>           raise AttributeError(
                "%s does not have the attribute %r" % (target, name)
            )
E           AttributeError: <module 'can_motor_control' from '.../dimos/dimos/.venv/lib/python3.12............/site-packages/can_motor_control/__init__.py'> does not have the attribute 'SocketCanBus'

local      = False
name       = 'SocketCanBus'
original   = sentinel.DEFAULT
self       = <unittest.mock._patch object at 0x3b009f3e0>
target     = <module 'can_motor_control' from '.../dimos/dimos/.venv/lib/python3.12............/site-packages/can_motor_control/__init__.py'>

../../../../..../uv/python/cpython-3.12.13-macos-aarch64-none/lib/python3.12/unittest/mock.py:1437: AttributeError

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Habitat is the first robot-agnostic entry; the go2 workflows keep their own table.
@greptile-apps

greptile-apps Bot commented Sep 8, 2026

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Contributor

RetriggerView in GreptileConfidence Score: 4/5

Not safe to merge until the unusable Habitat environment entries are removed or replaced with resolvable committed modules. The dependency-pinning concern is non-blocking but should be addressed for reproducible native environments.

Findings

  1. P1 Remove stale registry entries
  2. P2 Pin native dependencies

Summary

  • This change adds Habitat simulation integration, mapping and navigation support, and a standalone native runtime. Two committed module-registry entries cannot be generated or resolved from a clean checkout, so they must be removed or replaced before merging. The native runtime installer also resolves dependencies differently from the repository lock, which makes fresh installations non-reproducible.

Comment thread dimos/robot/all_blueprints.py Outdated
Comment thread dimos/simulation/habitat/nix/install.sh Outdated
- env, data and wrapper build under target/habitat: built files inside dimos/
  leaked two numba classes into all_blueprints.py
- zenoh session applies the full settings NativeModule sends, and exits when
  handed none (an LCM-transport launch)
- every layer pins transport=zenoh
- cmd_vel zeroes when stale (0.2 s), like the real connections
- scene download resumes via --no-replace instead of a dir check that marked
  an interrupted download complete
- loop integrates measured elapsed time on an anchored schedule
- drop the camera_info override: the bridge already pairs the pinhole to
  every image in the frame, and the override was starving depth_image
- pin eclipse-zenoh and dimos-lcm to uv.lock: a version skew makes SHM
  payloads arrive as unreadable handles
- world/depth_image hidden in the 3D view
@leshy leshy changed the title habitat nav integration habitat nav integration (habinav) Sep 9, 2026
@github-actions github-actions Bot added the ready-to-merge Required CI checks have passed on this PR label Sep 10, 2026
@leshy
leshy added this pull request to the merge queue Sep 10, 2026
Merged via the queue into main with commit 176730b Sep 10, 2026
44 of 53 checks passed
@leshy
leshy deleted the ivan/feat/habitat-sim branch September 10, 2026 22:40
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2 participants