dssp

Application to assign secondary structure to proteins

Creating and manipulating various protein sequence-structure datasets using Python, Julia, and other tools.

Simplified DSSP algorithm implemented in Julia

protein graph representation

Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation

dssp : software for secondary structure assignment, now extended for reading MD trajectory files

Protein threading framework based on double dynamic programming

Inventory of amino acids present on the surface of peripheral proteins of a same family

🧬 AI-powered protein structure-function analysis tool with 8-state secondary structure prediction, functional region identification, and interactive visualization. Built for researchers, educators, and students to understand how protein structure drives biological function.

Programming project (Python) - Implementation of the DSSP method (Secondary Structure Assignment)

Evolutionary model of protein secondary structure capable of revealing new biological relationships

The protein-engineering design loop as one Rust binary: mutate, fold, QC folders of models into Parquet, ESM-2 variant scoring, a terminal viewer, and a GA4GH TES 1.1 server. Science validated against mdtraj, FreeSASA, cctbx and PLIP in CI.

Python program which is able to analyse dssp files in order to estimate the interacting area and interacting residues between monomers of a complex protein

ProSutra is an automated pipeline for protein structure prediction, validation, and report generation with CLI, Streamlit, and Electron interfaces.

Python CLI tool to estimate Solvent-Accessible Surface Area (SASA) of proteins directly from PDB 3D atomic coordinates.

(M2-Project) Construction a data set of protein structures gathering structures filtered